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ZEN - ZEISS Efficient Navigation is the single user interface you will see on all light microscopy imaging systems from ZEISS. ZEN microscope software leads you simply and quickly to the result. At all times you see which options the system is making available to you and which step is appropriate to take next. ZEN browser allows you to view your images together with your colleagues, insert annotations, and even navigate Z-stacks in transmitted light and multi-channel fluorescence microscopy. The app also provides access to a ZEISS demo server showcasing impressive sample images acquired with Axio Scan.Z1 digital slide scanner by ZEISS Microscopy.
ZEN software has been extended to all Carl Zeiss light microscope systems to provide users with one identical software interface for all microscopy experiments.
ZEN software has been extended to all Zeiss light microscope systems to provide users with one identical software interface for all microscopy experiments. ZEN pro, ZEN lite, and ZEN desk module packages meet the requirements of various user groups. Smart Setup features intelligent functions that suggest a few different configurations appropriate for the fluorophores in a sample. Users can decide which parameters to optimize for their experiments, such as image acquisition or maximum resolution. Image-processing modules generate 3-D projections and export them as rendering or a film sequence.
Carl Zeiss Microscopy
Thornwood, NY, USA
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ZEN Imaging Software from Carl Zeiss Now Expanded
Efficient navigation for all microscope systems from Carl Zeiss
Thornwood, N.Y.: ZEN software was launched by Carl Zeiss for confocal laser scanning microscopes in 2007. The extremely logical structure of the ZEN user interface has received much praise and recognition from customers all over the world. Highly complex experiments can be designed and executed by users with minimal training and support.
Carl Zeiss is now expanding ZEN to drive all ZEISS light microscope systems. Users will experience one identical software interface for all their microscopy experiments. This offers synergies for research institutes using several microscopy technologies. The software meets the requirements of various user groups with different software packages: ZEN pro, ZEN lite and ZEN desk module packages.
The heart of ZEN is Smart Setup. Users select the fluorophores used in their samples. Smart Setup features intelligent functions that suggest a few different configurations appropriate for the fluorophores in the sample. Users can then decide which parameters to optimize for their experiments, such as image acquisition or maximum resolution. Smart Setup automatically configures the system based on this input. Dr. Horst Wolff, Product Manager for imaging software at Carl Zeiss, remembers: 'As a cell biologist, I always wanted a software solution that would control my microscope intelligently, do all settings automatically and therefore give me more time for my research.'
ZEN 2011 is optimized for recording several gigabytes of large image data sets. The software can store even high-speed dual camera time lapse series synchronously and reliably on the interlocked hard disk drives. Image stacks, time lapse series or tile images are saved together with the recording date of the system in the .czi format. Image processing modules generate 3D projections and export them as rendering or a film sequence.
About Carl Zeiss
Carl Zeiss Microscopy, LLC, offers microscopy solutions and systems for research, routine, and industrial applications. In addition, Carl Zeiss Microscopy markets microscopy systems for the clinical market, as well as optical sensor systems for industrial and pharmaceutical applications. Since 1846, Carl Zeiss has remained committed to enabling science and technology to go beyond what man can see. Today, Carl Zeiss is a global leader in the optical and opto-electronic industries.
With 12,872 current employees and offices in over 30 countries, Carl Zeiss is represented in more than 100 countries with production centers in Europe, North America, Central America and Asia.
Sales Inquiries: Maya Everett, Carl Zeiss Microscopy, (914) 681-7782, meverett@zeiss.com
SOURCE: Carl Zeiss Microscopy
Forms
Registration forms for the CIF platform
CIF > Imaris satellite license request form
CIF Registration Form
Guides and Manuals
Documents written by the CIF staff or official manuals to operate our instruments.
CIF Guides
[All] Use of the Airyscan module on the Zeiss LSM 780-880 series
How to correctly setup the Airyscan mode on Zeiss confocals for super-resolution. Written by Yannick Krempp
[Bugnon] Zeiss LSM 780 User Manual
Short user manual written by Yannick Krempp
[Bugnon] Zeiss LSM 710 User Manual
Short user manual written by Yannick Krempp
[All] Zeiss Zen Multitrack setup for faster and cleaner acquisitions
How to correctly setup multitrack channels using Zen on Zeiss confocals [710-780-880 series].
Written by Yannick Krempp
[Bugnon] Leica DMi8 User Guide
Short user manual written by Yannick Krempp
Official Manuals
[All] Zeiss LSM 710,780 User Manual
Official Zeiss Manual
[Bugnon] Leica DMi8 Manual
Official Leica Manual
Free Software
Free versions of commercial software and open-source packages used for image processing and analysis.
Commercial Packages
| Brand | Software | OS | Download page |
|---|---|---|---|
| Zeiss | Zen Lite | Zen Blue Edition 3.1 | Windows | https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html |
| Leica | LAS X Core Offline | Windows | https://webshare.leica-microsystems.com/latest/core/lifescience/ |
| Nikon | NIS Elements Viewer | Windows, Mac OS X | https://www.microscope.healthcare.nikon.com/en_EU/products/software/nis-elements/viewer |
| Hammamatsu | NDP.View2 | Windows, Mac OS X | https://www.hamamatsu.com/eu/en/product/type/U12388-01/index.html (Scroll down for links) |
| Various (Adobe, Microsoft, Matlab,…) for academic UNIL users only | Creative Cloud, Office, Matlab | Windows | https://www.unil.ch/ci/distrisoft |
Open-source or Freeware Packages
| Author(s) | Software | OS | Download page |
|---|---|---|---|
| Eliceiri/LOCI group at the University of Wisconsin-Madison, and the Jug and Tomancak labs at the MPI-CBG in Dresden. | Fiji (Image J + plugins) | Windows, Mac OS X, Linux | http://fiji.sc/ |
| QuPath is developed at the University of Edinburgh. The software was originally created at the Centre for Cancer Research & Cell Biology at Queen’s University Belfast, as part of research projects funded by Invest Northern Ireland and Cancer Research UK. | QuPath | Windows, Mac OS X, Linux | https://qupath.github.io/ |
| The CellProfiler project team is based in the Carpenter Lab at the Broad Institute of Harvard and MIT. The project was started in 2003 by Anne E. Carpenter and Thouis (Ray) Jones in the Sabatini Laboratory (Whitehead Institute for Biomedical Research) and Golland laboratory (MIT’s CSAIL) and is actively improved and maintained. | CellProfiler, Cellprofiler Analyst | Windows, Mac OS X | https://cellprofiler.org/releases/ |
| Orbit has been developed at Actelion Pharmaceuticals Ltd, now Idorsia Pharmaceuticals Ltd by Manuel Stritt. | Orbit | Windows, Mac OS X, Linux | http://www.orbit.bio/download/ |
| KNIME’s headquarters are based in Zurich, with additional offices in Konstanz, Berlin, and Austin. We’re open for innovation®, so visit us at KNIME. | KNIME Analytics | Windows, Mac OS X, Linux | https://www.knime.com/downloads/download-knime |
Newsletter
The CIF platform edits a yearly newsletter. Find here all the previous issues.
Newsletter - November 2019
Newsletter - June 2018
Plugins, macros and scripts
Plugins, macros and scripts written in various languages (java, python, macro) for extensible software like Fiji
Workshops
Workshop-related documents like slides, outlines or samples.
Live Cell Imaging [Florence Morgenthaler, Luigi Bozzo, 2019]
Critical steps and applications for live cell imaging in widefield & spinning disk confocal microscopy
F-Techniques [Luigi Bozzo, 2019]
Zen Microscope Software For Mac Windows 10
Slides of the presentation given by Luigi Bozzo on the various advanced F-Techniques : FRAP, FCS, FRET, FLIM, principle and application.
Free Software For Mac Downloads
Using HRM for batch deconvolution [2019, Yannick KREMPP]
Slides of the presentation given by Yannick Krempp on how to use the Huygens remote manager implemented at the CIF to do batch deconvolution.
Deconvolution [2019, Arnaud Paradis]
Slides from the CIF workshop given by Arnaud Paradis on Deconvolution
Digital Microscope Software